Gary J. Muehlbauer
Distinguished McKnight University Professor
Endowed Chair in Molecular Genetics
Applied to Crop Improvement,
Department of Agronomy and Plant Genetics
University of Minnesota
St. Paul, MN 55108
[email protected]
612-625-6228 (Office)
Educational Background
- 1986 B.S. Biology, Washington State University, Pullman, WA
- 1989 M.S. Plant Breeding, University of Nebraska, Lincoln, NE
- 1994 Ph.D. Plant Breeding, University of Minnesota, St. Paul, MN
Professional Positions
| University of Minnesota | 2020-present | Department Head Agronomy and Plant Genetics |
| University of Minnesota | 2013-present | Distinguished McKnight University Professor |
| University of Minnesota | 2012-2018 | Department Head Plant and Microbial Biology |
| University of Minnesota | 2009-present | Professor |
| University of Minnesota | 2006-present | Endowed Chair in Molecular Genetics |
| University of Minnesota | 2003-2009 | Associate Professor |
| Scottish Crop Research Institute | 2002-2003 | Visiting Professor (Sabbatical) |
| University of Minnesota | 1997-2003 | Assistant Professor |
| University of California, Berkeley | 1994-1997 | Postdoctoral Research Associate |
Awards and Fellowships
Gary Muehlbauer | AAAS Fellow | CSSA Crops Science Research Award
www.aaas.org/page/2021-fellows
| 2022 | Fellow, American Association for the Advancement of Science |
| 2021 | Research Award, Crop Science Society of America |
| 2015 | CIC-ALP Fellow, University of Minnesota |
| 2014 | USDA NIFA Partnership Award for Program Improvement through Global Engagement – TCAP |
| 2013 | Distinguished McKnight University Professor |
| 2011 | USDA Secretary’s Honor Award |
| 2011 | Fellow, American Society of Agronomy |
| 2011 | Fellow, Crop Science Society of America |
| 2001 | McKnight Landgrant Professorship, University of Minnesota |
| 1992 | Doctoral Dissertation Fellowship, University of Minnesota |
| 1994 | NIH Postdoctoral Fellowship |
Publications
Clare, S.J., R.M. King, A. Tawril, J.S. Havill, G.J. Muehlbauer, S. Carey, A. Harkess, N. Bassil, and K.R. Altendorf. 2023. Affordable and convenient diagnostic marker to identify male and female hops. G3 doi.org/10.1093/g3journal/jkad216.
Bethke, G.*, Y. Huang*, G. Hensel, S. Wyant, X. Li, S. Shin, S. Heinen, M.B. Quin, S. McCormick, P. Morrell, Y. Dong, S. Salvi, J. Kumlehn, F. Berthiller, and G.J. Muehlbauer. 2023. UGT13248 confers type II resistance to Fusarium graminearum in barley. Plant Physiol. doi.org/10.1093/plphys/kiad467. *indicates co-first authors.
Schreiber, M.*, R. Wonneberger*, A. Hanning*, M. Coulter, G. Muehlbauer**, N. Stein**, and R. Waugh**. 2023. Generating genomic resources and expression data for a 2-row spring barley European breeder population. Scientific Data (In press). *indicates co-first authors, **indicates co-corresponding authors.
Wonneberger, R.*, M. Schreiber*, A. Haaning*, M. Coulter, G.J. Muehlbauer**, R. Waugh**, and N. Stein**. 2023. Characterization of the European two-rowed spring barley germplasm reveals a major haplotype switch on chromosome 5H. Theor. Appl. Genet 136:174. doi.org/10.1007/s00122-023-04418-7. *indicates co-first authors, **indicates co-corresponding authors.
Havill, J.S., B.J. Classen, D.H. Gent, J.A. Henning, and G.J. Muehlbauer. 2023. Identification of quantitative trait loci involved in R1-mediated resistance to powdery mildew and sex determination in hop (Humulus lupulus L.). Theor. Appl. Genet. 136:154. doi.org/10.1007/s00122-023-04399-7.
Havill, J.S., R.J. Hatlen, G.J. Muehlbauer, and T.D. Miles. 2023. First report of halo blight on hop (Humulus lupulus) caused by Diaporthe humulicola in Minnesota. Plant Disease 107:2523. doi.org/10.1094/PDIS-01-23-0192-PDN.
Sallam, A., M. Haas, Y. Huang, Y. Dong, Z. Tandukar, G. Muehlbauer, K.P. Smith, and B.J. Steffenson. 2023. Meta-analysis of the genetics of resistance to Fusarium head blight and deoxynivalenol accumulation in barley and considerations for breeding. Plant Breeding doi.org/10.1111/pbr.13121.
Kim, Y., I.A. Herniter, Y. Wang, J.S. Havill, J. Johnson-Cicalese, G.J. Muehlbauer, M. Iorizzo, and N. Vorsa. 2023. Trait mapping of phenolic acids in interspecific (Vaccinium corymbosum x V. darrowii) diploid blueberry population. Plants 12: 1346, https://doi.org/10.3390/plants12061346.
Virdi, K.S., S. Sreekanta, A. Dobbels, A. Haaning, D. Jarquin, R.M. Stupar, A.J. Lorenz, and G.J. Muehlbauer. 2023. Branch angle and leaflet shape are associated with canopy coverage in soybean. The Plant Genomedoi.org/10.1002/tpg2.20304.
Havill, J.S., M.S. Wiseman, J.A. Henning, D.H. Gent, and G.J. Muehlbauer. 2023. Registration of seven powdery mildew resistant wild hop (Humulus lupulus L.) accessions. J. Plant Registrations doi.org/10.1002/plr2.20255.
Chen, Yun-Yu, M. Schreiber, M. Bayer, I. Dawson, P. Hedley, L. Lei, A. Akhunova, C. Liu, K. Smith, J. Fay, G.J. Muehlbauer, B. Steffenson, P. Morrell, R. Waugh, and J. Russell. The evolutionary patterns of barley pericentromeric chromosome regions, as shaped by linkage disequilibrium and domestication. The Plant J.doi.org/10.1111/tpj.15908.
Coulter, M., J.C. Entizne, W. Guo, M. Bayer, R. Wonneberger, L. Cardle, M Schreiber, A. Haaning, G.J. Muehlbauer, N. McCallum, J. Fuller, C. Simpson, N. Stein, J. Brown, R. Waugh, and R. Zhang. 2022. BaRTv2: A highly resolved barley reference transcriptome for accurate transcript-specific RNA-seq quantification. The Plant J. doi.org/10.1111/tpj.15871.
Huang, Y., L. Yin, A.H. Sallam, S. Heinen, L. Li, K. Beaubien, R. Dill-Macky, Y. Dong, B.J. Steffenson, K.P. Smith and G.J. Muehlbauer. 2021. Genetic dissection of a pericentromeric region of barley chromosome 6H associated with Fusarium head blight, grain protein content and agronomic traits. Theor. Appl. Genet. 134:3963-3981. doi.org/10.1007/s00122-021-03941-9.
Tamang, B.G., J.P. Lopez, E. McCoy, A. Haaning, A. Sallam, B.J. Steffenson, G.J. Muehlbauer, K.P. Smith, and W. Sadok. 2021. Association between xylem vasculature size and field-evaluated freezing survival in winter barley. J Agron. & Crop Sci. https://doi.org/10.1111/jac.12537.
Kentaro, S., D. Copetti, M. Okada, T. Wicker, T. Tameshige, M. Hatakeyama, R. Shimizu-Inatsugi, C. Aquino, K. Nishimura, F. Kobayashi, K. Murata, T. Kuo, E. Delorean, J. Poland, G. Haberer, M. Spannagl, K. Mayer, J. Gutierrez-Gonzalez, G. Muehlbauer, C. Monat, A. Himmelbach, S. Padmarasu, M. Mascher, S. Walkowiak, T. Nakazaki, T. Ban, K. Kawaura, H. Tsuji, C. Pozniak, N. Stein, J. Sese, S. Nasuda, and H. Handa. 2021. De novogenome assembly of the Japanese wheat cultivar Norin 61 highlights functional variation in flowering time and Fusarium resistance genes in East Asian Genotypes. Plant and Cell Physiology 62:8-27. doi.org/10.1093/pcp/pcaa152.
Bajgain, P., A. Sallam, G. Annor, E. Conley, B.J. Steffenson, G.J. Muehlbauer, and J.A. Anderson. 2021. Genetic characterization of flour quality and bread-making traits in a spring wheat nested association mapping population. Crop Science https://doi.org/10.1002/csc2.20432.
156. Gao, L., D.-H. Koo, P. Juliana, T. Rife, D. Singh, C.L. da Silva, T. Lux, K. Dorn, M. Clinesmith, P. Silva, X. Wang, M. Spannagl, C. Monat, B. Friebe, B. Steuernagel, G.J. Muehlbauer, S. Walkowiak, C. Pozniak, R. Singh, N. Stein, M. Mascher, A. Fritz, and J. Poland. 2021. The Aegilops ventricosa 2NS segment in bread wheat: cytology, genomics and breeding. Theor. Appl. Genet. 134:529-542; doi.org/10.1007/s00122-020-03712-y.
Walkowiak, S., L. Gao, C. Monat, G. Haberer, M.T. Kassa, J. Brinton, R.H. Ramirez-Gonzalez, M.C. Kolodziej, E. Delorean, D. Thambugala, V. Klymiuk, B. Byrns, H. Gundlach, V. Bandi, J. Nunuez Siri, K. Nilsen, C. Aquino, A. Himmelbach, D. Copetti, T. Ban, L. Venturini, M. Bevan, B Clavijo, D-H. Koo, J. Ens, K. Wiebe, A. N’Diaye, A.K. Fritz, C. Gutwin, A. Fiebig, C. Fosker, B. Xiao Fu, G. Garcia Accinelli, K.A. Gardner, N. Fradgley, J. Gutierrez-Gonzalez, G. Halstean-Nussloch, M. Hatakeyama, C. Shin Koh, J. Deek, A.C. Costamagna, P. Fobert, D. Heavens, H. Kanamori, K. Kawaura, F. Kobayashi, T. Kuo, N. McKenzie, K. Murata, Y. Nabeke, T. Paape, S. Padmarasu, L. Percival-Alwyn, S. Kagale, U. Scholz, J. Sese, P. Juliana, R. Singh, R. Shimizu-Inatsugi, D. Swarbreck, J. Cockram, H. Budak, T. Tamashige, T. Tanaka, H, Tsuji, J. Wright, J. Wu, B. Steuernagel, I. Small, S. Cloutier, G. Keeble-Gagnere, G. Muehlbauer, J. Tibbets, S. Nasuda, J. Melonek, P.J. Hucl, A.G. Sharpe, M. Clark, E. Legg, A. Bharti, P. Langridge, A. Hall, C. Uauy, M. Mascher, S.G. Krattinger, H. Handa, K.K. Shimizu, A. Distelfeld, K. Chalmers, B. Keller, K.F.X Mayer, J. Poland, N. Stein, C.A. McCartney, M. Spannagl, T. Wicker, and C.J. Pozniak. 2020. Multiple wheat genomes reveal global variation in modern breeding. Nature 588:277–283; doi.org/10.1038/s41586-020-2961-x.
Virdi, K.S., M. Spencer, A. Stec, Y. Xiong, R. Merry, G. Muehlbauer, and R. Stupar. 2020. Similar seed composition phenotypes are observed from CRISPR-generated in-frame and knockout alleles of a soybean KASIortholog. Frontiers in Plant Science doi.org/10.3389/fpls.2020.01005.
Sallam, A.H., F. Manan, P. Bajgain, M. Martin, T. Szinyei, E. Conley, G. Brown-Guedira, G.J. Muehlbauer, J.A. Anderson, and B.J. Steffenson. 2020. Development of a spring wheat nested association mapping population and genetic architecture of agronomic and quality traits. The Plant Genome doi:10.1002/tpg2.20051.
Sadok, W., J. López, Y Zhang, B. Gole Tamang, and G. Muehlbauer. 2020. Sheathing the blade: significant contribution of sheaths to daytime and nighttime gas exchange in a grass crop. Plant, Cell & Environmenthttps://doi.org/10.1111/pce.13808.
Yu, X., S. Leiboff, X. Li, T. Guo, N. Ronning, X. Zhang, G. Muehlbauer, M. Timmermans, P. Schnable, M. Scanlon, and J. Yu. 2020. Genomic prediction of maize micro-phenotypes provides insights for optimizing selection and mining diversity. Plant Biotechnology Journal https://doi.org/10.1111/pbi.13420.
Haaning, A.M., K.P. Smith, G.L. Brown-Guedira, S. Chao, P. Tyagi, and G.J. Muehlbauer. 2020. Natural genetic variation underlying tiller development in barley (Hordeum vulgare L). Genes/Genomes/Genetics 4:1197-1212. doi.org/10.1534/g3.119.400612.
Monat, C., S. Padmarasu, T. Lux, T. Wicker, H. Gundlach, A. Himmelbach, J. Ens, C. Li, G. Muehlbauer, A. Schulman, R. Waugh, I. Braumann, C. Pozniak, U. Scholz, K. Mayer, M. Spannagl, N. Stein, and M. Mascher. 2019. TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools. Genome Biology 20:284.
Knauer, S., M. Javelle, L. Li, X. Li, X. Ma, K. Wimalanathan, S. Kumari, R. Johnston, S. Leiboff, R. Meeley, P.S. Schnable, D. Ware, C. Lawrence-Dill, J. Yu, G.J. Muehlbauer, M.J. Scanlon and M.C.P. Timmermans. 2019. Natural variation in molecular circuitries underlying maize shoot meristem function drives key architectural traits. Genome Research doi:10.1101/gr.250878.119.
Nice, L., Y. Huang, B.J. Steffenson, P. Schwarz, L. Gyenis, K.P. Smith, and G.J. Muehlbauer. 2019. Mapping malting quality and yield characteristics in a North American 2-rowed malting barley × wild barley advanced backcross population. Mol. Breeding 39:121; doi: 10.1007/s11032-019-1030-3.
Lei, L., A.M. Poets, C. Liu, S.R. Wyant, P.J. Hoffman, C.K. Carter, R.M. Trantow, X. Li, G.J. Muehlbauer, F. Katagiri and P.L. Morrell. 2019. Discovery of barley gene candidates for low temperature and drought tolerance via environmental association approaches. Genes/Genomes/Genetics 9:3423-3438; doi: 10.1534/g3.119.400401.
Hemshrot, A., A.M. Poets, P. Tyagi, L. Lei, C. Carter, C.N. Hirsch, L. Li, G. Brown-Guedira, P.L. Morrell, G.J. Muehlbauer and K.P. Smith. 2019. Development of a multi-parent population for genetic mapping and allele discovery in six-row barley. Genetics 213:595-613; doi: 10.1534/genetics.119.302046.
Gutierrez-Gonzalez, J., M. Mascher, J. Poland and G.J. Muehlbauer. 2019. Dense genotyping-by-sequencing linkage maps of two Synthetic W7984 × Opata reference populations provide insights into wheat structural diversity. Scientific Reports 9:1793.
Okagaki, R.J., S. Dukowic-Schulze, W.B. Eggleston and G.J. Muehlbauer. A critical assessment of 60 years of maize intragenic recombination. Frontiers in Plant Science doi: 10.3389/fpls.2018.01560
Huang, Y., M. Haas, S. Heinen, B.J. Steffenson, K.P. Smith, and G.J. Muehlbauer. 2018. QTL Mapping of Fusarium head blight and correlated agromorphological traits in an elite barley cultivar Rasmusson. Frontiers in Plant Science doi: 10.3389/fpls.2018.01260
Liu, S., J.C. Schnable, A. Ott, C-T. Yeh, N.M. Springer, J. Yu, G. Muehlbauer, M.C.P. Timmermans, M.J. Scanlon, and P.S. Schnable. 2018. Intragenic meiotic crossovers exhibit preference for syntenic genes and can generate novel alleles with transgressive expression levels. Mol. Bio. Evol. doi.org/10.1093/molbev/msy174
International Wheat Genome Sequencing Consortium. 2018. Shifting the limits in wheat research and breeding through a fully annotated reference genome. Science DOI: 10.1126/science.aar7191.
Okagaki, R.J., A. Haaning, H. Bilgic, S. Heinen, A. Druka, M. Bauer, R. Waugh and G.J. Muehlbauer. 2018. ELIGULUM-A gene controls leaf patterning and shoot branching in barley. Plant Physiology 176:2750-2760.
Sallam, A., P. Tyagi, G. Brown-Guedira, G.J. Muehlbauer, A. Hulse, and B.J. Steffenson. 2017. Genome-wide association mapping of stem rust resistance in Hordeum vulgare subsp. spontaneum. Genes/Genomes/Genetics 7:3491-3507.
Chen, L., P. Zhang, Y. Fan, Q. Lu, Q. Li, J. Yan, G.J. Muehlbauer, P.S. Schnable, M. Dai, and L. Li. 2017. Circular RNAs mediated by transposons are associated with transcriptomic and phenotypic variation. New Phytology 217:1292-1306,
Li, X., H. Michlmayr, W. Schweiger, A. Malachova, S. Shin, Y. Huang, Y. Dong, G. Wiesenberger, S. McCormick, M. Lemmens, P. Fruhmann, C. Hametner, F. Berthiller, G. Adam and G.J. Muehlbauer. 2017. A barley UDP-glucosyltransferase inactivates nivalenol and provides Fusarium head blight resistance in transgenic wheat. J. Exp. Bot. 68:2187-2197.
Dobbels, A.A., J.-M. Michno, B.W. Campbell, K.S. Virdi, G.J. Muehlbauer, S.L. Naeve, and R.M. Stupar. 2017. An induced chromosomal translocation in soybean disrupts a KAS 1 ortholog and is associated with a high sucrose and low oil seed phenotype. Genes/Genomes/Genetics 7:1215-1223.
Beier, S., A. Himmelbach, C. Colmsee, X-Q. Zhang, R. Barrero, Q. Zhang, L. Li, M. Bayer, D. Bolser, S. Taudien, M. Groth, M. Felder, A. Hastie, H. Šimková, H. Stańková, J. Vrána, S. Chan, M. Muñoz-Amatriaín, R. Ounit, S. Wanamaker, T. Schmutzer, L. Aliyeva-Schnorr, S. Grasso, J. Tanskanen, D. Sampath, D. Heavens, S. Cao, B. Chapman, F. Dai, Y. Han, S. Li, J. McCooke, C. Tan, S. Wang, S. Yin, G. Zhou, J.A. Poland, M. Bellgard, A. Houben, J. Doležel, S. Ayling, S. Lonardi, P. Langridge, G.J. Muehlbauer, P. Kersey, M.D. Clark, M. Caccamo, A.H. Schulman, M. Platzer, T.J. Close, M. Hansson, G. Zhang, I. Braumann, C. Li, R. Waugh, U. Scholz, N. Stein and M. Mascher. 2017. Construction of the map-based reference sequence of the barley (Hordeum vulgare L.) genome. Scientific Data 4:170044.
Mascher, M., H. Gundlach, A. Himmelbach, S. Beier, S. Twardziok, T. Wicker, V. Radchuk, C. Dockter, P. Hedley, J. Russell, M. Bayer, L. Ramsay, P. Flores, H. Liu, G. Haberer, X-Q. Zhang, Q. Zhang, R. Barrero, L. Li, S. Taudien, M. Groth, M. Felder, A. Hastie, H. Šimková, H. Stańková, J. Vrána, S. Chan, M. Muñoz-Amatriaín, R. Ounit, S. Wanamaker, D. Bolser, C. Colmsee, T. Schmutzer, L. Aliyeva-Schnorr, S. Grasso, J. Tanskanen, A. Chailyan, D. Sampath, D. Heavens, S. Cao, B. Chapman, F. Dai, Y. Han, S. Li, J. McCooke, C. Tan, P. Wang, S. Wang, S. Yin, G. Zhou, J.A. Poland, M. Bellgard, L. Borisjuk, A. Houben, J. Doležel, S. Ayling, S. Lonardi, P. Kersey, P. Langridge, G.J. Muehlbauer, M.D. Clark, M. Caccamo, A.H. Schulman, K.F.X. Mayer, M. Platzer, T.J. Close, U. Scholz, M. Hansson, G. Zhang, I. Braumann, M. Spannagl, C. Li, R. Waugh and N. Stein. 2017. A chromosome conformation capture ordered sequence of the barley genome. Nature 544:427-433.
Nice, L.M., B.J. Steffenson, T. Blake, R. Horsley, K.P. Smith and G.J. Muehlbauer. 2017. Mapping agronomic traits in a wild barley advanced backcross nested association mapping (AB-NAM) population. Crop Science 57:1-12.
Burlakoti, R., G. Sanjaya, S. Chao, K. Smith, R. Horsley, B. Cooper, G. Muehlbauer and S. Neate. 2017. Genome-wide association study of spot form of net blotch resistance in the upper Midwest barley breeding programs. Phytopathology 107:100-108.
Li, L., R. Briskine, R. Schaefer, P.S. Schnable, C.L. Myers, L.E. Flagel, N.M. Springer and G.J. Muehlbauer. 2016. Co-expression network analysis of duplicate genes in maize (Zea mays L.) reveals no subgenome bias. BMC Genomics DOI: 10.1186/s12864-016-3194-0.
Mascher, M., V.J. Schunemann, U. Davidovich, A. Himmelbach, S. Hubner, T. Fahima, A. Korol, M. David, N. Marom, S. Riehl, M. Schreiber, S.H. Vohr, R.E. Green, I.K. Dawson, J. Russell, B. Kilian, G.J. Muehlbauer, R. Waugh, J. Krause, E. Weiss and N. Stein. 2016. Genomic evidence from 6000-year old grains sheds new light on barley domestication history. Nature Genetics 48:1089-1093.
Huang, Y., L. Li, K.P. Smith and G.J. Muehlbauer. 2016. RNA-Sequencing revealed differential resistance mechanisms of two barley near-isogenic line pairs to Fusarium head blight and identified long noncoding RNAs responsive to Fusarium graminearum infection. BMC Genomics 17:387.
Russell, J., M. Mascher, I.K. Dawson, S. Kyriakidis, C. Calixto, F. Freund, M. Bayer, I. Milne, T. Marshall-Griffiths, S. Heinen, A. Hofstad, R. Sharma, A. Himmelbach, M. Knauft, M. van Zonneveld, J.W.S. Brown, K. Schmid, B. Kilian, G.J. Muehlbauer*, N. Stein*, and Robbie Waugh*. 2016. Adaptation of barley to different environments revealed in the exomes of a range-wide collection of landraces and wild relatives. Nature Genetics 48:1024-1030. *Joint corresponding authors
Nice, L.M., B.J. Steffenson, G.L. Brown-Guedira, E.D. Akhunov, T.J.Y. Kono, P.L. Morrell, R. Horsley, K.P. Smith, and G.J. Muehlbauer. 2016. Development and genetic characterization of an advanced backcross – nested association mapping (AB-NAM) population of wild × cultivated barley. Genetics 203:1453-1467.
Campbell, B., A. Hofstad, S. Sreekanta, F. Fu, T. Kono, J. O'Rourke, C. Vance, G. Muehlbauer, and R. Stupar. 2016. Fast neutron induced structural rearrangements at a soybean NAP1 locus result in gnarled trichomes. Theor. Appl. Genet. 129:1725–1738.
Poets, A.M., M. Mohammadi, K. Seth, H. Wang, T.J.Y. Kono, Z. Fang, G.J. Muehlbauer, K.P. Smith and P.L. Morrell. 2016. The effects of both recent and long-term-selection and genetic drift are readily evident in North American barley breeding populations. Genes/Genomes/Genetics 6:609-622.
Pan, Q., L. Li, X. Yang, H. Tong, S. Xu, Z. Li, W. Li, G.J. Muehlbauer, J. Li, and J. Yan. 2016. The genome-wide recombination landscape of maize reveals intragenic and intergenic recombination variation and association of intragenic recombination with phenotypic variation. New Phytology 210:1083–1094.
Samuel, L., X. Li, A. Hu, N. Todt, J. Yang, X. Li, X. Yu, G.J. Muehlbauer, M.C.P. Timmermans, J. Yu, P.S. Schnable, and M.J. Scanlon. 2015. Genetic control of morphometric diversity in the maize shoot apical meristem. Nature Comm. 6:8974 | DOI: 10.1038/ncomms9974.
Muñoz-Amatriaín, M., S. Lonardi, M.C. Luo, K. Madishetty, J.T. Svensson, M.J. Moscou, S. Wanamaker, T. Jiang, A. Kleinhofs, G.J. Muehlbauer, R.P Wise, N. Stein, Y. Ma, E. Rodriguez, D. Kudrna, P.R. Bhat, S. Chao, P. Condamine, S. Heinen, J. Resnik, R. Wing, H.N. Witt, M. Alpert, M. Beccuti, S. Bozdag, F. Cordero, H. Mirebrahim, R. Ounit, Y. Wu, F. You, J. Zheng, H. Šimková, J. Doležel J. Grimwood, J. Schmutz, D. Duma, L. Altschmied, T. Blake, P. Bregitzer, L. Cooper, M. Dilbirligi, A. Falk, L. Feiz, A. Graner, P. Gustafson, P.M. Hayes, P. Lemaux, J. Mammadov, and T.J. Close. 2015. Sequencing of 15,622 gene-bearing BACs reveals new features of the barley genome. The Plant J. 84:216-227.
Hofstad, A.N., T. Nussbaumer, E. Akhunov, S. Shin, K.G. Kugler, H.C. Kistler, K.F.X. Mayer, and G.J. Muehlbauer. 2015. Examining the transcriptional response of the wheat Fhb1 gene to Fusarium graminearum infection and deoxynivalenol treatment. The Plant Genome doi:10.3835/plantgenome2015.05.0032.
Li, X., S. Shin, S. Heinen, R. Dill-Macky, F. Berthiller, T. Clemente, S. McCormick and G.J. Muehlbauer. 2015. Transgenic wheat expressing a barley UDP-glucosyltransferase detoxifies deoxynivalenol and provides high levels of Fusarium head blight resistance. Mol. Plant-Microbe Interact. 28:1237-1246.
Ames, N., A. Dreiseitl, B.J. Steffenson and G.J. Muehlbauer. 2015. Mining wild barley for powdery mildew resistance. Plant Pathology 64:1396-1406.
Tavakol, E., R. Okagaki, G. Verderio, V. Shariati, A. Hussien, H. Bilgic, M.J. Scanlon, N.R. Todt, T.J. Close, A. Druka, R. Waugh, B. Steuernagel, R. Ariyadasa, A. Himmelbach, N. Stein, G.J. Muehlbauer* and L. Rossini*. 2015. The barley Uniculme4 gene encodes a BOP-like protein that controls tillering, and proximal-distal leaf patterning. Plant Physiology 168:164-174. *Indicates co-last authors.
Thompson, A.M., J. Yu, M.C.P. Timmermans, P. Schnable, J.C. Crants, M.J. Scanlon, and G.J. Muehlbauer. 2015. Diversity of maize shoot apical meristem architecture and its relationship to plant morphology. Genes/Genomes/Genetics 5:819-827.
Chapman, J.A., M. Mascher, A. Buluç, K. Barry, E. Georganas, V. Strnadova, A. Session, S. Seghal, L. Oliker, J. Schmutz, K.A. Yelick, U. Scholz, R. Waugh, J.A. Poland, G.J. Muehlbauer, N. Stein and D.S. Rokhsar. 2015. Chromosome-scale assembly of the hexaploid wheat genome from whole genome shotgun sequencing. Genome Biology 16:26.
Thompson, A.M., J. Yu, M.C.P. Timmermans, P. Schnable, J.C. Crants, M.J. Scanlon, and G.J. Muehlbauer. 2015. Diversity of maize shoot apical meristem architecture and its relationship to plant morphology. G3 5:819-827.
Tavakol, E., G. Verderio, A. Hussien, H. Bilgic, R. Okagaki, M.J. Scanlon, N.R. Ronning, T.J. Close, A. Druka, R. Waugh, N. Stein, G.J. Muehlbauer* and L. Rossini*. 2015. The barley Uniculme4 gene encodes a BOP-like protein that controls tillering, and proximal-distal leaf patterning. Plant Physiology 168:164-174. *Indicates co-last authors.
Ames, N., A. Dreiseitl, B.J. Steffenson and G.J. Muehlbauer. 2015. Mining wild barley for powdery mildew resistance. Plant Pathology doi: 10.1 111/ppa.12384.
Li, X., S. Shin, S. Heinen, R. Dill-Macky, F. Berthiller, T. Clemente, S. McCormick and G.J. Muehlbauer. 2015. Transgenic wheat expressing a barley UDP-glucosyltransferase detoxifies deoxynivalenol and provides high levels of Fusarium head blight resistance. Molecular Plant-Microbe Interactions (In press).
Muñoz-Amatriaín, M., S. Lonardi, M.C. Luo, K. Madishetty, J.T. Svensson, M.J. Moscou, S. Wanamaker, T. Jiang, A. Kleinhofs, G.J. Muehlbauer, R.P Wise, N. Stein, Y. Ma, E. Rodriguez, D. Kudrna, P.R. Bhat, S. Chao, P. Condamine, S. Heinen, J. Resnik, R. Wing, H.N. Witt, M. Alpert, M. Beccuti, S. Bozdag, F. Cordero, H. Mirebrahim, R. Ounit, Y. Wu, F. You, J. Zheng, H. Šimková, J. Doležel J. Grimwood, J. Schmutz, D. Duma, L. Altschmied, T. Blake, P. Bregitzer, L. Cooper, M. Dilbirligi, A. Falk, L. Feiz, A. Graner, P. Gustafson, P.M. Hayes, P. Lemaux, J. Mammadov, and T.J. Close. 2015. Sequencing of 15,622 gene-bearing BACs reveals new features of the barley genome. The Plant J. doi: 10.1111/tpj.12959.
Hussien, A., E. Tavakol, D.S. Horner, M. Muñoz-Amatriaín, G.J. Muehlbauer and L. Rossini. 2014. Genetics of tillering in rice and barley. The Plant Genome doi:10.3835/plantgenome2013.10.0032.
Mohammadi, M., J.B. Endelman, S. Nair, S. Chao, S.S. Jones, G.J. Muehlbauer, S.E. Ullrich, B. Baik, M.L.Wise and K.P. Smith. 2014. Association mapping of grain hardness, polyphenol oxidase, total phenolics, amylose content, and β-glucan in US barley breeding germplasm. Mol. Breeding 34:1229-1243.
Pauli, D., G.J. Muehlbauer, K. Smith, B. Cooper, D. Hole, D. Obert, S. Ullrich and T. Blake. 2014. Association mapping of agronomic QTLs in U.S. spring barley breeding germplasm. The Plant Genome doi: 10.3835/plantgenome2013.11.0037. *Featured in CSSA news.
Zhou, H., B.J. Steffenson, G. Muehlbauer, R. Wanyera, P. Njau and S. Ndeda. 2014. Association mapping of stem rust race TTKSK resistance in US barley breeding germplasm. Theor. Appl. Genet. 127:1293–1304.
Muñoz-Amatriaín, M., A. Cuestos-Marcos, P.M. Hayes and G.J. Muehlbauer. 2014. Barley genetic variation: implications for crop improvement. Brief. Funct. Genomics 13:341-350.
Muñoz-Amatriaín, M., A. Cuesta-Marcos, J.B. Endelman, J. Comadran, M. Bonman, H. Bockelman, S. Chao, J. Russell, R. Waugh, P.M. Hayes and G.J. Muehlbauer. 2014. Genetic diversity and population structure in a worldwide barley collection of landraces and cultivars and its potential for genome-wide association studies. PLoS One DOI: 10.1371/journal.pone.0094688.
International Wheat Genome Sequencing Consortium. 2014. A chromosome-based draft sequence of the hexaploid bread wheat genome. Science DOI: 10.1126/science.1251788.
Fang, Z., A.M. Gonzales, M.T. Clegg, K.P. Smith, G.J. Muehlbauer, B.J. Steffenson and P.L. Morrell. 2014. Two genomic regions contribute disproportionately to geographic differentiation in wild barley. G3 4:1193-1203.
Thompson, A., J. Crants, P.S. Schnable, J. Yu, M.C.P. Timmermans, N.M. Springer, M.J. Scanlon and G.J. Muehlbauer. 2014. Genetic control of maize shoot apical meristem architecture. G3 4:1327-1337.
Bolon, Y-T., A.O. Stec, J-M.S. Michno, J. Roessler, P.B. Bhuskar, L. Ries, A.A. Dobbels, B.W. Campbell, N.D. Young, J.E. Anderson, D. Grant, J.H. Orf, S.L. Naeve, G.J. Muehlbauer, C.P. Vance, and R.M. Stupar. 2014. Genome resilience and prevalence of segmental duplications following fast neutron irradiation of soybean. Genetics 198:967-981.
Bolon, Y.-T.E., D.L. Hyten, J.H. Orf, C.P. Vance, and G.J. Muehlbauer. 2014. Transcriptional networks regulate oilseed development and reveal complex genetic architecture involved in seed oil accumulation. The Plant Genome 7:1-14.
Ariyadasa, R., M. Mascher, T. Nussbaumer, D. Schulte, Z. Frenkel, N. Poursarebani, R. Zhou, B. Steuernagel, H. Gundlach, S. Taudien, M. Felder, M. Platzer, A. Himmelbach, T. Schmutzer, P.E. Hedley, G.J. Muehlbauer, U. Scholz, A. Korol, K.F.X. Mayer, R. Waugh, P. Langridge, A. Graner, and N. Stein. 2014. A sequence-ready physical map of barley anchored genetically by two million SNPs. Plant Physiol. 164:412-423.
Li, L., S.R. Eichten, R. Shimizu, K. Petsch, C-T. Yeh, W. Wu, M.J. Scanlon, P.S. Schnable, M.C.P. Timmermans, J. Yu, N.M. Springer and G.J. Muehlbauer. 2014. Genome-wide discovery and characterization of maize long non-coding RNAs. Genome Biology 15:R40.
Kovalsky Paris, M.P., W. Schweiger, C. Hametner, R. Stückler, G.J. Muehlbauer, E. Varga, R. Krska, F. Berthiller and G. Adam. 2014. Formation of the novel masked mycotoxin zearalenone-16-O-glucoside by engineered yeast expressing a barley UDP-glucosyltransferase and by zearalenone treated plant cells. J. Agric. Food Chem. 62:1181-1189.
Mascher, M.*, G.J. Muehlbauer*, D.S. Rokhsar, J. Chapman, J. Schmutz, K. Barry, M. Muñoz-Amatriaín, T.J. Close, R.P. Wise, A.H. Schulman, A. Himmelbach, K.F.X. Mayer, U. Scholz, J.A. Poland, N. Stein and R. Waugh. 2013. Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ). Plant J. 76:718–727. *Indicates co-first authors.
Mascher, M., T.A. Richmond, D.J. Gerhardt, A. Himmelbach, L. Clissold, D. Sampath, S. Ayling, B. Steuernagel, M. Pfeifer, M. D‘Ascenzo, P. Hedley, A.M Gonzales, P.L. Morrell, B. Kilian, F. Blattner, U. Scholz, K.F.X. Mayer, A.J. Flavell, G.J. Muehlbauer, R. Waugh, J.A. Jeddeloh and N. Stein. 2013. Barley whole exome capture: a new tool for genomic research in the genus Hordeum and beyond. Plant J. 76:494-505.
Schweiger, W., B. Steiner, C. Ametz, G. Siegwart, G. Wiesenberger, F. Berthiller, M. Lemmens, H. Jia, G. Adam, G. Muehlbauer, D. Kreil and H. Buerstmayr. 2013. Transcriptomic characterization of two major Fusarium resistance QTL, Fhb1 and Qfhs.ifa-5A, identify novel candidate genes. Mol. Plant Path. 14:772-785.
Muñoz‐Amatriaín, M., S.R Eichten, T. Wicker, T.A. Richmond, M. Mascher, B. Steuernagel, U. Scholz, R. Ariyadasa, M. Spannagl, T. Nussbaumer, K.F.X. Mayer, S. Taudien, M. Platzer, J.A. Jeddeloh, N.M. Springer, G.J. Muehlbauer* and N. Stein*. 2013. Distribution, functional impact and origin mechanisms of copy number variation in the barley genome. Genome Biology 14:R58. *Indicates co-last authors.
Li, L., K. Petsch, R. Shimizu, S. Liu, W.W. Xu, K. Ying, J. Yu, M.J. Scanlon, P.S. Schnable, M.C.P. Timmermans, N.M. Springer, and G.J. Muehlbauer. 2013. Mendelian and non-Mendelian regulation of gene expression in the maize shoot apex. PLoS Genetics 9:e1003202.
Okagaki, R., S. Cho, W.M. Kruger, W.W. Xu, S. Heinen and G.J. Muehlbauer. 2012. The barley UNICULM2 gene resides in a centromeric region and may be associated with signaling and stress responses. Functional & Integrative Genomics 13:33–41.
Jordan, N.R., L. Aldrich-Wolfe, S.C. Huerd, D.L. Larson and G. Muehlbauer. 2012. Soil-occupancy effects of invasive and native grassland plant species on composition and diversity of mycorrhizal associations. Invasive Plant Science and Management 5:494-505.
Berger, G.L., S. Liu, M.D. Hall, W.S. Brooks, S. Chao, G.J. Muehlbauer, B.-K. Baik and C.A. Griffey. Marker-trait associations in Virginia Tech winter barley identified using genome-wide mapping. Theor. Appl. Genet. 126:693–710.
The International Barley Genome Consortium. 2012. A physical, genetic and functional sequence assembly of the barley genome. Nature 491:711-716.
Huang, Y., B.P. Millet, K.A. Beaubian, S.K. Dahl, B.J. Steffenson, K.P. Smith and G.J. Muehlbauer. Haplotype diversity and population structure in cultivated and wild barley evaluated for Fusarium head blight responses. Theor. Appl. Genet. 126:619–636.
Takacs, E.M., J. Li, L. Ponnala, D. Janick-Buckner, J. Yu, G.J. Muehlbauer, M.C.P. Timmermans, P.S. Schnable, Q. Sun, D. Nettleton and M.J. Scanlon. 2012. Ontogeny of the maize shoot apical meristem. The Plant Cell 24:3219-3234.
Blake, V.C., J.G. Kling, P.M. Hayes, J.-L. Jannink, S.R. Jillella, J. Lee, D.E. Matthews, S. Chao, T.J. Close, G.J. Muehlbauer, K.P. Smith, R.P. Wise and J.A. Dickerson. 2012. The Hordeum Toolbox - The barley coordinated agricultural project genotype and phenotype resource. The Plant Genome 5:81-91.
Li, X., C. Zhu, C-T. Yeh, W. Wu, F. Tian, G. Bai, E.S. Buckler, G.J. Muehlbauer, M.C.P. Timmermans, M.J. Scanlon, P.S. Schnable and J. Yu. 2012. Genic and non-genic contributions to quantitative trait variation in maize as detected via GWAS. Genome Research 22: 2436-2444.
Zhou, H., G. Muehlbauer and B.J. Steffenson. 2012. Population structure and linkage disequilibrium in elite barley breeding germplasm from the United States. J. Zhejiang Univ. 13:438-451.
Shin, S., J.A. Torres-Acosta, S.J. Heinen, S. McCormick, M. Lemmens, P.M.K. Paris, F. Berthiller, G. Adam and G.J. Muehlbauer. 2012. Transgenic Arabidopsis thaliana expressing a barley UDP-glucosyltransferase exhibit resistance to the mycotoxin deoxynivalenol. J. Exp. Bot. 63:4731-4740.
Makarevitch, I., A. Thompson, G.J. Muehlbauer and N.M. Springer. 2012. Brd1 gene in maize encodes brassinosteroid oxidase 6. PLoS ONE 7: e30798.
Muñoz-Amatriaín, M., M.J. Moscou, P.R. Bhat, J.T. Svensson, J. Bartoš, P. Suchánková, H. Šimková, T.R. Endo, R.D. Fenton, S. Lonardi, A.M. Castillo, S. Chao, L. Cistué, A. Cuesta-Marcos, K.L. Forrest, M.J. Hayden, P.M. Hayes, R.D. Horsley, K. Makoto, D. Moody, K. Sato, M.P. Vallés, B.B.H. Wulff, G.J. Muehlbauer, J. Doležel and T.J. Close. 2011. An improved consensus linkage map of barley based on flow sorted chromosomes and SNP markers. The Plant Genome 4:238-249.
Wang, H., K.P. Smith, E. Combs, T. Blake, R. Horsley and G.J. Muehlbauer. 2011. Effect of population size and unbalanced data sets on QTL detection using genome-wide association mapping in barley breeding germplasm. Theor. Appl. Genet. 124:111–124.
von Zitzewitz, J., F. Condon, A. Corey, A. Cuesta‐Marcos, T.Filichkina, K. Haggard, S.P. Fisk, K.P. Smith, G.J. Muehlbauer, I. Karsai and P.M. Hayes. 2011. The genetics of winterhardiness in barley: perspectives from genome‐wide association mapping. The Plant Genome 4:76-91.
Bolon, Y-T., W.J. Haun, W.W. Xu, D. Grant, M.G. Stacey, R.T. Nelson, D.J. Gerhardt, J.A. Jeddeloh, G. Stacey, G.J. Muehlbauer, J.H. Orf, S.L. Naeve, R.M. Stupar and C.P. Vance. 2011. Phenotypic and genomic analyses of a fast neutron mutant population resource in soybean. Plant Physiology 156:240-253.
Sato, K., T.J. Close, P. Bhat, M. Muñoz-Amatriaín and G.J. Muehlbauer. 2011. Genetic mapping and alignment of recombinant chromosome substitution lines from a cross of EST donors by SNP typing in barley. Plant and Cell Physiology 52:728-737.
St. Pierre, S., N.M. Springer and G.J. Muehlbauer. 2011. Density stress has minimal impacts on the barley or maize seedling transcriptome. The Plant Genome 4:47-54.
Li, X., C. Zhu, Z. Lin, Y. Wu, D. Zhang, G. Bai, W. Song, J. Ma, G.J. Muehlbauer, M.J. Scanlon, M. Zhang and J. Yu. 2011. A conserved boundary of chromosome size variation in diploid eukaryotic genomes. Molecular Biology and Evolution 28:1901-1911.
Ramsay, L., J. Comadran, A. Druka, D.F. Marshall, W.T.B. Thomas, M. Macaulay, K. MacKenzie, C. Simpson, J. Fuller, N. Bonar, P.M. Hayes, U. Lunqvist, J.D. Franckowiak, T.J. Close, G.J. Muehlbauer and R. Waugh. 2011. INTERMEDIUM-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domestication gene TEOSINTE BRANCHED 1. Nature Genetics 43:169-172.
Comadran, J., L. Ramsay, K. MacKenzie, P. Hayes, T.J. Close, G. Muehlbauer, N. Stein and R. Waugh. 2011. Patterns of polymorphism and linkage disequilibrium in cultivated barley. Theor. Appl. Genet. 122:523-531.
Woody, J.L., A.J. Severin, Y-T. Bolon, B. Joseph, B.W. Diers, A.D. Farmer, N. Weeks, G.J. Muehlbauer, R.T. Nelson, D. Grant, J.E. Specht, M.A. Graham, S.B. Cannon, G.D. May, C.P. Vance and R.C. Shoemaker. 2011. Gene expression patterns are correlated with genomic and genic structure in soybean. Genome 54:10-18.
Massman, J., B. Cooper, R. Horsley, S. Neate, R. Dill-Macky, S. Chao, Y. Dong, P. Schwarz, G.J. Muehlbauer and K.P. Smith. 2011. Genome-wide association mapping of Fusarium head blight resistance in contemporary barley breeding germplasm. Mol. Breeding. 27:439-454.
Cuesta-Marcos, A., P. Szucs, T.J. Close, T. Filichkin, G.J. Muehlbauer, K.P. Smith and P.M. Hayes. 2010. Genome-wide SNPs and re-sequencing of growth habit and inflorescence genes in barley: implications for association mapping in germplasm arrays varying in size and structure. BMC Genomics 11:707.
Muñoz-Amatriaín, M., Y. Xiong, H. Bilgic, A.D. Budde, M.R. Schmitt, K.P. Smith and G.J. Muehlbauer. 2010. Transcriptome analysis of a breeding program pedigree examines gene expression diversity and reveals target genes for the improvement of malting quality. BMC Genomics 11:653.
Nair, S., S.E. Ullrich, T.K. Blake, B. Cooper, C.A. Griffey, P.M. Hayes, D.J. Hole, R.D. Horsley, D.E. Obert, K.P. Smith, G.J. Muehlbauer and B.-K. Baik. 2010. Variation in kernel hardness and associated traits in U.S. barley breeding lines. Cereal Chem. 87:461-466.
Waugh, R., D. Marshall, B. Thomas, J. Comadran, J. Russell, T. Close, N. Stein, P. Hayes, G. Muehlbauer, J. Cockram, D. O’Sullivan, I. Mackay, A. Flavell, AGOUEB, BarleyCAP and L. Ramsay. 2010. Whole-genome association mapping in elite inbred crop varieties. Genome 53:967-972.
Jia, H., B. Millett, S. Cho, H. Bilgic, K.P. Smith and G.J. Muehlbauer. 2010. Transcriptome analysis of three barley near-isogenic line pairs carrying contrasting alleles for different Fusarium head blight resistance QTLs. Funct. Integr. Genomics 11:95-102.
Severin, A., J.L. Woody, Y-T. Bolon, B. Joseph, B.W. Diers, A.D. Farmer, G.J. Muehlbauer, R. Nelson, D. Grant, J.E. Specht, M.A. Graham, S.B. Cannon, G.D. May, C.P. Vance and R.C. Shoemaker. 2010. RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome. BMC Plant Biology 10:160.
Bolon, Y-T., B. Joseph, S.B. Cannon, M.A. Graham, B.W. Diers, A.D. Farmer, G.D. May, G.J. Muehlbauer, J.E. Specht, Z.J. Tu, N. Weeks, W.W. Xu, R.C. Shoemaker and C.P. Vance. 2010. Complementary genetic and genomic approaches help characterize the linkage group I seed protein QTL in soybean. BMC Plant Biology 10:41.
Dabbert, T., R.J. Okagaki, S. Cho, J. Boddu and G.J. Muehlbauer. 2010. The genetics of barley low-tillering mutants: low number of tillers-1 (lnt1). Theor. Appl. Genet. 121:705-715.
Gardiner, S.A., J. Boddu, F. Berthiller, C. Hametner, R. Stupar, G. Adam and G.J. Muehlbauer. 2010. Transcriptome analysis of the barley-deoxynivalenol interaction: evidence for a role of glutathione in deoxynivalenol detoxification. Mol. Plant-Microbe Interact. 23:962-976.
Roy, J.K., K.P. Smith, G.J. Muehlbauer, S. Chao, T.J. Close and B.J. Steffenson. 2010. Association mapping of spot blotch resistance in wild barley. Mol. Breeding 26:243–256.
Schweiger, W., J. Boddu, S. Shin, B. Poppenberger, F. Berthiller, M. Lemmens, G.J. Muehlbauer and G. Adam. 2010. Validation of a candidate deoxynivalenol-inactivating UDP-glucosyltransferase from barley by heterologous expression in yeast. Mol. Plant-Microbe Interact. 23:977-986.
Hamblin, M.T., T.J. Close, P.R. Bhat, S. Chao, J.G. Kling, K.J. Abraham, T. Blake, W.S. Brooks, B. Cooper, C.A. Griffey, P.M. Hayes, D.J. Hole, R.D. Horsley, D.E. Obert, K.P. Smith, S.E. Ullrich, G.J. Muehlbauer and J-L. Jannink. 2010. Population structure and linkage disequilibrium in US barley germplasm: implications for association mapping. Crop Sci. 50:556-566.
Close, T.J., P.R. Bhat, S. Lonardi, Y. Wu, N. Rostoks, L. Ramsay, A. Druka, N. Stein, J.T. Svensson, S. Wanamaker, S. Bozdag, M.L. Roose, M.J. Moscou, S. Chao, R. Varshney, P. Szűcs, K. Sato, P.M. Hayes, D.E. Matthews, A. Kleinhofs, G.J. Muehlbauer, J. DeYoung, D.F. Marshall, K. Madishetty, R.D. Fenton, P. Condamine,, A. Graner and R. Waugh. 2009. Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Muñoz-Amatriaín, M., L. Cistué, Y. Xiong, H. Bilgic, A.D. Budde, M.R. Schmitt, K.P. Smith, P.M. Hayes and G.J. Muehlbauer. 2009. Structural and functional characterization of a winter malting barley. Theor. Appl. Genet. 120:971-984.
Millett, B.P., Y. Xiong, S.K. Dahl, B.J. Steffenson and G.J. Muehlbauer. 2009. Wild barley accumulates distinct sets of transcripts in response to pathogens of different trophic lifestyles. Physiol. Molec. Plant Path. 74:91-98.
Xu, W.W., S. Cho, S.S. Yang, Y-T. Bolon, H. Bilgic, H. Jia*, Y. Xiong and G.J. Muehlbauer. 2009. Single-feature polymorphism discovery by computing probe affinity shape powers. BMC Genetics 10:48.
Schreiber, A.W., T. Sutton, R.A. Caldo, E. Kalashyan, B. Lovell, G. Mayo, G.J. Muehlbauer, A. Druka, R. Waugh, R.P. Wise, P. Langridge and U. Baumann. 2009. Comparative transcriptomics in the Triticeae. BMC Genomics 10:285.
Jia, H., S. Cho and G.J. Muehlbauer. 2009. Transcriptome analysis of a wheat near-isogenic line pair carrying Fusarium head blight resistant and susceptible alleles. Mol. Plant-Microbe Interact. 22:1366-1378.
Szucs, P., V.C. Blake, P.R. Bhat, S. Chao, T.J. Close, A. Cuesta-Marcos, G.J. Muehlbauer, L. Ramsay, R. Waugh and P.M. Hayes. 2009. An integrated resource for barley linkage map and malting quality QTL alignment. The Plant Genome 2:134-140.
Jannink, J-L., H. Iwata, P.R. Bhat, S. Chao, P. Wenzl and G.J. Muehlbauer. 2009. Marker imputation in barley association studies. The Plant Genome 2:11-22.
Waugh, R., Jannink, J-L., G.J. Muehlbauer and L. Ramsay. 2009. The emergence of whole genome association scans in barley. Curr. Opin. Plant Biol. 12:218-222.
Dabbert, T., R. Okagaki, S. Cho, J. Boddu and G.J. Muehlbauer. 2009. The genetics of barley low-tillering mutants: absent lower laterals (als). Theor. Appl. Genet. 118:1351-1360.
Schulte, D., T.J. Close, A. Graner, P. Langridge, T. Matsumoto, G. Muehlbauer, K. Sato, A.H. Schulman, R. Waugh, R.P. Wise and N. Stein. 2009. The International Barley Sequencing Consortium – at the threshold of efficient access to the barley genome. Plant Physiol. 149:142-147.
Steiner, B., K. Schieszl, E.P. Litwicka, H. Kurz, M. Lemmens, H. Jia*, G. Muehlbauer and H. Buerstmayr. 2008. Gene expression analysis of related wheat lines with constrasting levels of head blight resistance after Fusarium graminearum inoculation. Cereal Res. Comm. 36:267-269.
Lewis, J.M., C.A. Mackintosh, E. Gilding, S. Shin, S. Kravchenko, G. Baldridge, R. Zeyen and G.J. Muehlbauer. 2008. Overexpression of maize Teosinte Branched1 in wheat suppresses tiller development. Plant Cell Rep. 27:1217-1225.
Shin, S., C.A. Mackintosh, J. Lewis, S.J. Heinen, L. Radmer, R. Dill-Macky, G.D. Baldridge, R.J. Zeyen and G.J. Muehlbauer. 2008. Transgenic wheat expressing a barley class II chitinase gene has enhanced resistance to Fusarium Head Blight. J. Exp. Bot. 59:2371-2378.
Chang, Y-L., S. Cho, H.C. Kistler, H-C. Sheng and G.J. Muehlbauer. 2007. Bacterial artificial chromosome-based physical map of Gibberella zeae (Fusarium graminearum). Genome 50:954-962.
Cuomo, C.A., U. Güldener, J-R. Xu, F. Trail, B.G. Turgeon, A. Di Pietro, J.D. Walton, L-J. Ma, S.E. Baker, M. Rep, G. Adam, J. Antoniw, T. Baldwin, S. Calvo, Y-L. Chang, D. DeCaprio, L.R. Gale, S. Gnerre, R.S. Goswami, K. Hammond-Kosack, L.J. Harris, K. Hilburn, J.C. Kennell, S. Kroken, J.K. Magnuson, G. Mannhaupt, E. Mauceli, H.-W. Mewes, R. Mitterbauer, G. Muehlbauer, M. Münsterkötter, D. Nelson, K. O’Donnell, T. Ouellet, W. Qi, H. Quesneville, M.I.G. Roncero, K-Y. Seong, I.V. Tetko, M. Urban, C. Waalwijk, T.J. Ward, J. Yao, B.W. Birren and H.C. Kistler. 2007. The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science 317:1400-1402.
Gyenis, L., S.J. Yun, K.P. Smith, B.J. Steffenson, E. Bossolini and G.J. Muehlbauer. 2007. Genetic architecture of quantitative trait loci associated with morphological and agronomic trait differences in a wild by cultivated barley cross. Genome 50:714-723.
Bilgic, H., S. Cho, D.F. Garvin and G.J. Muehlbauer. 2007. Mapping barley genes to chromosome arms by transcript profiling of wheat-barley ditelosomic chromosome addition lines. Genome 50:898-906.
Nduulu, L.M., A. Mesfin, G.J. Muehlbauer and K.P. Smith. 2007. Analysis of the chromosome 2(2H) region of barley associated with the correlated traits Fusarium head blight resistance and heading date. Theor. Appl. Genet. 115:561-570.
Steffenson, B.J., P. Olivera, J.K. Roy, Y. Jin, K.P. Smith and G.J. Muehlbauer. 2007. A walk on the wild side: mining wild wheat and barley collections for rust resistance genes. Aust. J. Agric. Res. 58:532-544.
Boddu, J., S. Cho and G.J. Muehlbauer. 2007. Transcriptome analysis of trichothecene-induced gene expression in barley. Mol. Plant-Microbe Interact. 20:1364-1375.
Moncada, K.M., N.J. Ehlke, G.J. Muehlbauer, C.C. Sheaffer, D.L. Wyse and L.R. DeHaan. 2007. Genetic variation in three native plant species across the state of Minnesota. Crop Sci. 47:2379-2389.
Mackintosh, C.A., J. Lewis, L.E. Radmer, S. Shin, S.J. Heinen, L.A. Smith, M.N. Wyckoff, R. Dill-Macky, C.K. Evans, S. Kravchenko, G.D. Baldridge, R.J. Zeyen and G.J. Muehlbauer. 2007. Overexpression of defense response genes enhances the resistance of wheat to Fusarium Head Blight. Plant Cell Rep. 26:479-488.
Wenzl, P., H. Li, J. Carling, M. Zhou, H. Raman, E. Paul, P. Hearnden, C. Maier, L. Xia, V. Caig, J. Ovesná, M. Cakir, D. Poulsen, J. Wang, R. Raman, K.P. Smith, G.J. Muehlbauer, K.J. Chalmers, A. Kleinhofs, E. Huttner and A. Kilian. 2006. A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and phenotypic traits. BMC Genomics 7:206.
Druka, A., G.J. Muehlbauer, I. Druka, R. Caldo, U. Baumann, A. Schreiber, N. Rostoks, R. Wise, T. Close, A. Kleinhofs, A. Graner, A. Schulman, P. Langridge, K. Sato, P. Hayes, J. McNicol, D. Marshall and R. Waugh. 2006. An atlas of gene expression from seed to seed through barley development. Funct. Integr. Genomics 6:202-211.
Güldener, U., K. Seong, J. Boddu, S. Cho, F. Trail, J-R. Xu, G. Adam, H-W. Mewes, G.J. Muehlbauer and H.C. Kistler. 2006. Development of a Fusarium graminearum Affymetrix GeneChip for profiling fungal gene expression in vitro and in planta. Fungal Genet. Biol. 43:316-325.
Muehlbauer, G.J., B.S. Bhau, N.H. Syed, S. Heinen, S. Cho, D. Marshall, S. Pateyron, N. Buisine, B. Chalhoub and A.J. Flavell. 2006. A hAT superfamily transposase domesticated by the cereal grass genome. Mol. Gen. Genomics 275:553-563.
Cho, S., D.F. Garvin and G.J. Muehlbauer. 2006. Transcriptome analysis and physical mapping of barley genes in wheat-barley chromosome addition lines. Genetics 172:1277-1285.
Yun, S.J., L. Gyenis, E. Bossolini, P.M. Hayes, I. Matus, K.P. Smith, B.J. Steffenson, R. Tuberosa and G.J. Muehlbauer. 2006. Validation of quantitative trait loci for multiple disease resistances using advanced backcross lines developed with a wild barley (Hordeum vulgare subsp. spontaneum). Crop Sci. 46:1179-1186.
Boddu, J., S. Cho, W.M. Kruger and G.J. Muehlbauer. 2006. Transcriptome analysis of the barley-Fusarium graminearum interaction. Mol. Plant-Microbe Interact. 19:407-417.
Mackintosh, C.A., D.F. Garvin, L.E. Radmer, S.J. Heinen and G.J. Muehlbauer. 2006. A model wheat cultivar for transformation to improve resistance to Fusarium Head Blight. Plant Cell Rep. 25:313-319.
Mammadov, J.A., Z. Liu, R.M. Biyashev, G.J. Muehlbauer and M.A. Saghai Maroof. 2006. Cloning, genetic and physical mapping of resistance gene analogs in barley (Hordeum vulgare). Plant Breeding 125:32-42.
Yun, S.J., L. Gyenis, P.M. Hayes, I.M. Matus, K.P. Smith, B.J. Steffenson and G.J. Muehlbauer. 2005. Quantitative trait loci for multiple disease resistance in wild barley. Crop Sci. 45:2563-2572.
Henderson, D.C., G.J. Muehlbauer and M.J. Scanlon. 2005. Radial leaves of the maize mutant ragged seedling2 retain dorsiventral anatomy. Dev. Biol. 282:455-466.
Ibrahim, A.F.M., P.E. Hedley, L. Cardle, W. Kruger, D.F. Marshall, G.J. Muehlbauer and R. Waugh. 2005. A comparative analysis of transcript abundance using SAGE and closed Affymetrix arrays. Funct. Integ. Gen. 5:163-174.
Caldwell, D.G., N. McCallum, P. Shaw, G.J. Muehlbauer, D.F. Marshall and R. Waugh. 2004. A structured mutant population for forward and reverse genetics in barley (Hordeum vulgare L.). The Plant J. 40:143-150.
Al-Saady, N.A., K.A. Torbert, L. Smith, I. Makarevitch, G. Baldridge, R.J. Zeyen, G.J. Muehlbauer, N.E. Olszewski and D.A. Somers. 2004. Tissue specificity of the sugarcane bacilliform virus promoter in oat, barley and wheat. Mol. Breeding 13:331-338.
Close, T.A., S. Wanamaker, R.A. Caldo, S.M. Turner, D.A. Ashlock, J.A. Dickerson, R.A. Wing, G.J. Muehlbauer, A. Kleinhofs and R.P. Wise. 2004. Global expression profiling in cereals: 22K barley GeneChip comes of age. Plant Physiol. 134:960-968.
Canci, P.C., L.M. Nduulu, G.J. Muehlbauer, R. Dill-Macky, D.C. Rasmusson and K.P. Smith. 2004. Validation of quantitative trait loci for fusarium head blight and kernel discoloration resistance in barley. Mol. Breeding 14:91-104.
Canci, P.C., L. Nduulu, R. Dill-Macky, G.J. Muehlbauer, D.C. Rasmusson and K.P. Smith. 2003. The genetic relationship between kernel discoloration resistance and grain protein in barley. Crop Sci. 43:1671-1679.
Babb, S. and G.J. Muehlbauer. 2003. Genetic and morphological characterization of the barley uniculm2 (cul2) mutant. Theor. Appl. Genet. 106:846-857.
Mesfin, A., K.P. Smith, R. Dill-Macky, C.K. Evans, R. Waugh, C.D. Gustus and G.J. Muehlbauer. 2003. Quantitative trait loci for Fusarium head blight resistance in barley in a two-rowed by six-rowed population. Crop Sci. 43:307-318.
DeHaan, L.R., C.C. Sheaffer, N.J. Ehlke, G.J. Muehlbauer and D.L. Wyse. 2003. Illinois bundleflower genetic diversity determined by AFLP analysis. Crop Sci. 43:402-408.
Kruger, W.M., C. Pritsch, S. Chao and G.J. Muehlbauer. 2002. Functional and comparative bioinformatic analysis of expressed genes from wheat spikes infected with Fusarium graminearum. Mol. Plant-Microbe Interact. 15:445-455.
Yu, G-Y., and G.J. Muehlbauer. 2001. Benzothiadiazole-induced gene expression in wheat spikes does not provide resistance to Fusarium head blight. Physiol. Mol. Plant Path. 59:129-136.
Muehlbauer, G.J. and D.A. Somers. 2001. Genetically modified barley and the brewing industry. MBAA Technical Quarterly 38:145-154.
Kolb, F.L., G-H. Bai, G.J. Muehlbauer, J.A. Anderson, K.P. Smith and G. Fedak. 2001. Host plant resistance genes for Fusarium head blight: mapping and manipulation with molecular markers. Crop Sci. 41:611-619.
Pritsch, C., C.P Vance, W.R. Bushnell, D.A. Somers, T.M. Hohn and G.J. Muehlbauer. 2001. Systemic expression of defense response genes in wheat spikes as a response to Fusarium graminearum infection. Physiol. Mol. Plant Path. 58:1-12.
Muehlbauer, G.J., O. Riera-Lizarazu, R.G. Kynast, D. Martin, R.L. Phillips and H.W. Rines. 2000. A maize-chromosome 3 addition line of oat exhibits expression of the maize homeobox gene Liguleless3 and alterations of cell fates. Genome 43:1055-1064.
Yu, Y., J.P. Tomkins, R. Waugh, D.A. Frisch, D. Kudrna, A. Kleinhofs, R.S. Brueggemann, G.J. Muehlbauer, R.P. Wise and R.A. Wing. 2000. A bacterial artificial chromosome library for barley (Hordeum vulgare L.) and the identification of clones containing putative resistance genes. Theor. Appl. Genet. 101:1093-1099.
Pritsch, C., G.J. Muehlbauer, W.R. Bushnell, D.A. Somers and C.P. Vance. 2000. Fungal development and induction of defense response genes during early infection of wheat spikes by Fusarium graminearum. Mol. Plant-Microbe Interact. 13:159-169.
de la Peña, R.C., K. Smith, F. Capettini, G.J. Muehlbauer, M. Gallo-Meagher, R. Dill-Macky, D.A. Somers and D.C. Rasmusson. 1999. Quantitative trait loci associated with resistance to fusarium head blight and kernel discoloration in barley. Theor. Appl. Genet. 99:561-569.
Muehlbauer, G.J.*, J. Fowler*, L. Girard, R. Tyers, L. Harper and M. Freeling. 1999. Ectopic expression of the maize homeobox gene Liguleless3 alters cell fates in the leaf. Plant Physiol. 119:651-662. *Indicates co-first authors.
Muehlbauer, G.J., J. Fowler and M. Freeling. 1997. Sectors expressing the homeobox gene liguleless3 implicate a time-dependent mechanism for cell fate acquisition along the proximal-distal axis of the maize leaf. Development 124:5097-5106.
Fowler, J.*, G.J. Muehlbauer* and M. Freeling. 1996. Mosaic analysis of the Liguleless3 mutant phenotype in maize by coordinate suppression of Mutator-insertion alleles. Genetics 143:489-503. *Indicates co-first authors.
Muehlbauer, G.J., D.A. Somers, B.F. Matthews and B.G. Gengenbach. 1994. Molecular genetics of the maize aspartate kinase-homoserine dehydrogenase gene family. Plant Physiol. 106:1303-1312.
Muehlbauer, G.J., B.G. Gengenbach, D.A. Somers and C.M. Donovan. 1994. Genetic and amino acid analysis of two maize threonine-overproducing, lysine-insensitive aspartate kinase mutants. Theor. Appl. Genet. 89:767-774.
Muehlbauer, G.J., P.E. Staswick, J.E. Specht, G.L. Graef, R.C. Shoemaker and P. Keim. 1991. RFLP mapping using near-isogenic lines in soybean [Glycine max (L.) Merr.]. Theor. Appl. Genet. 81:189-198.
Muehlbauer, G.J., J.E. Specht, P.E. Staswick, G.L. Graef and M.A. Thomas-Compton. 1989. Application of the near-isogenic line gene mapping technique to isozyme markers. Crop Sci. 29:1548-1553.
Muehlbauer, G.J., J.E. Specht, M.A. Thomas-Compton, P.E. Staswick and R.L Bernard. 1988. Near-isogenic lines - A potential resource in the integration of conventional and molecular marker linkage maps. Crop Sci. 28:729-735.
Book chapters
Muehlbauer, G.J. and Wm. R. Bushnell. 2003. Transgenic Approaches to Resistance. In: Fusarium Head Blight of Wheat and Barley. K.J. Leonard and Wm. R. Bushnell eds. American Phytopathological Society Press, St. Paul, MN.
Druka, A., K. Sato, and G.J. Muehlbauer. 2011. Genome Analysis: The State of Knowledge of Barley Genes. In press Barley: Production, Improvement and Use. S. Ullrich ed. John Wiley and Sons.
Rossini, L., R. Okagaki, A. Druka, and G.J. Muehlbauer. 2014. Barley shoot and inflorescence architecture. In: Biotechnological Approaches to Barley Improvement. J. Kumlehn and N. Stein eds. Springer-Verlag Berlin Heidelberg
Rossini, L., G.J. Muehlbauer, R. Okagaki, S. Salvi and M. von Korff. 2018. Genetics of whole plant morphology and architecture. In: The Barley Genome, Compendium of Plant Genomes. N. Stein and G.J. Muehlbauer eds. Springer-Verlag.
Hansson, M., T. Komatsuda, N. Stein, and G.J. Muehlbauer. 2018. Molecular mapping and cloning of genes and QTLs. In: The Barley Genome, Compendium of Plant Genomes. N. Stein and G.J. Muehlbauer eds. Springer-Verlag.
Book
Triticeae Genetics and Genomics. 2009. C. Feuillet and G.J. Muehlbauer eds. Springer-Verlag.
The Barley genome. 2018. N. Stein and G.J. Muehlbauer eds., Springer-Verlag.